*** Make sure that Prof. Keller has added you to both the spin and spinquest groups in Rivanna. ***

Using Tensorflow with BKM2002-Formulation

1.  Copy the sample files from the following Rivanna folder "/project/ptgroup/ANN_scripts/BKM-Formulation-Test/BKM-tf"
       cd  /project/ptgroup/ANN_scripts/BKM-Formulation-Test/BKM-tf

2. Run the following commands on your terminal
                    module load anaconda/2020.11-py3.8
                    module load singularity/3.7.1
                    module load tensorflow/2.1.0-py37
                     following step is needed to run only once (it will copy the relevant .sif file to your /home directory)
                    cp  $$CONTAINERDIR/tensorflow-2.1.0-py37.sif /home/$USER  

 (make sure that you have  the same module loads included in your grid.slurm file)

3. Run the following command to submit the job
    ./jobscript.sh <Name_of_Job> <Number_of_Replicas>

example: 
./jobscript.sh CFF_BKM_tf_Test 10

Using PyTorch with BKM2002-Formulation

1.  Copy the sample files from the following Rivanna folder "/project/ptgroup/ANN_scripts/BKM-Formulation-Test/BKM-PyTorch"
       cd  /project/ptgroup/ANN_scripts/BKM-Formulation-Test/BKM-PyTorch

2. Run the following commands on your terminal
                    module load anaconda/2020.11-py3.8
                    module load singularity/3.7.1
                    module load pytorch/1.8.1
                     following step is needed to run only once (it will copy the relevant .sif file to your /home directory)
                    cp  $$CONTAINERDIR/pytorch-1.8.1.sif /home/$USER

 (make sure that you have  the same module loads included in your grid.slurm file)

3. Run the following command to submit the job
   $ ./jobscript.sh <Name_of_Job> <Number_of_Replicas>

example:  $ ./jobscript.sh CFF_BKM_PyTorch_Test 10

Note:
If you download the code from GitHub to a Windows machine and then if you upload those files to Rivanna; then you will need to do the following steps

$ chmod u+x jobscript.sh
$ sed -i -e 's/\r$//' jobscript.sh
   and
$ sed -i -e 's/\r$//' <all_files>  in order to avoid any dos < - > unix conversions

** If you copy the fiels from /project/ptgroup/ANN_scripts/BKM-Formulation-Test/BKM-PyTorch then you don't have to do these above modification steps **

For more details check Zulkaida's folder on the github page: https://github.com/extraction-tools/ANN/tree/master/Zulkaida/BKM

Using Tensorflow with VA-Formulation

The following steps are for an example to submit a job for neural-net fit to 'N' number of kinematic settings in the data set (where N is an integer reflects to the range of kinematic settings which you will input in the sbatch command to submit the job).

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1. Make sure that Prof. Keller has added you to both the spin and spinquest groups in Rivanna.
2. Copy the sample files from the following Rivanna folder "/project/ptgroup/ANN_scripts/Rivanna_test_code_for_ANNVA-Formulation-Initial-Test"
      $ cd  /project/ptgroup/ANN_scripts/Rivanna_test_code_for_ANNVA-Formulation-Initial-Test

Here are the list of file that you need to have in your work directory:

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